#!/bin/bash

BasePath=../..;source $BasePath/Commons.sh
source Universals.sh

DAS="DASs/cDAQ16-a/FullSteam"
DeviceList="ITs/TimepixPC/cDAQ16-a $DAS"

notebook='null'
columns="5 6 7 8"
columncount=4
firstcolumn=5
diags=('U_mc1' 'U_mc5' 'U_mc9' 'U_mc13')




function PostDischargeAnalysis
{

     if [[ ! -d DAS_raw_data_dir ]]; then ln -s $BasePath/Devices/`dirname $DAS` DAS_raw_data_dir; fi


    for i in $columns ; do
        cp DAS_raw_data_dir/ch$i.csv ${diags[$i-$firstcolumn]}.csv
    done

     Gnuplot_BasicGraph  #@Commons
    Analysis
    GenerateDiagWWWs $instrument $setup $DAS $notebook $port $DropBox
      
}      


function Analysis()
{

local nb_id="20_Position_DK"

#    for i in `seq 2 $LastChannelToAcq` ; do
#       awk '{print $1","'\$$i'}' DAS_raw_data_dir/NIdata_6133.lvm > ${diags[$i-2]}.csv;
#    done


   #export SHOT_NO=`cat ../../shot_no` #linux only
    sed -i "s/shot_no\ =\ 0/shot_no\ =\ `cat $SHMS/shot_no`/g" $nb_id.ipynb
    sed -i "s/vacuum_shot\ =\ 0/vacuum_shot\ =\ `cat /dev/shm/golem/ActualShot/Operation/Discharge/Parameters/vacuum_shot`/g" $nb_id.ipynb
    mkdir Results
    
    jupyter-nbconvert --ExecutePreprocessor.timeout=300 --to html --execute $nb_id.ipynb --output analysis.html > >(tee -a jup-nb_stdout.log) 2> >(tee -a jup-nb_stderr.log >&2)
    

    if [[ -f icon-fig.png ]]; then
        convert -resize $icon_size icon-fig.png graph.png
        convert -resize $icon_size icon-fig.png analysis.jpg
    fi
    


}


function Analysis_Ab()
{

local nb_id="20_Position_DK"

   #export SHOT_NO=`cat ../../shot_no` #linux only
    sed -i "s/shot_no\ =\ 0/shot_no\ =\ `cat $SHMS/shot_no`/g" $nb_id.ipynb
    sed -i "s/vacuum_shot\ =\ 0/vacuum_shot\ =\ `cat /dev/shm/golem/ActualShot/Diagnostics/LimiterMirnovCoils/Parameters/vacuum_shot`/g" $nb_id.ipynb
    scp $nb_id.ipynb golem@Abacus:Stabilizace/ # Uprava4Abacus
    
    
    #jupyter-nbconvert  --ExecutePreprocessor.timeout=30 --execute notebook.ipynb --output analysis.html #Lokalni vypocet
    ssh golem@Abacus "cd Stabilizace;mkdir -p Results;/home/golem/anaconda3/bin/jupyter  nbconvert --ExecutePreprocessor.timeout=300 --to html --execute $nb_id.ipynb --output analysis.html > >(tee -a jup-nb_stdout.log) 2> >(tee -a jup-nb_stderr.log >&2)"
    
    scp golem@Abacus:Stabilizace/analysis.html .
    scp golem@Abacus:Stabilizace/icon-fig.png .
    scp golem@Abacus:Stabilizace/plasma_position.png .
    scp golem@Abacus:Stabilizace/video.mp4 .
    scp golem@Abacus:Stabilizace/plasma_position.csv .
    scp golem@Abacus:Stabilizace/jup-nb_stderr.log .
    scp golem@Abacus:Stabilizace/jup-nb_stdout.log .
    scp golem@Abacus:Stabilizace/Results/*.* Results/
    scp golem@Abacus:Stabilizace/Results/* Results/

    if [[ -f icon-fig.png ]]; then
        convert -resize $icon_size icon-fig.png graph.png
        convert -resize $icon_size icon-fig.png analysis.jpg
    fi
    


}