Thu Sep 12 17:03:20 CEST 2013
============== action: acquisition =======================
Thu
real	0m0.001s
user	0m0.001s
sys	0m0.000s
=== acquisition done === Time: .0023s
Thu Sep 12 17:03:20 CEST 2013
============== action: analysis =======================
Performing advanced discharge analysis
 confinent time failed  Loading of constant failed: /golem/database/operation/shots/12828/diagnostics/Microwaves/0712Interferometer.ON/results/electron_density_mean
 error: [Errno 2] No such file or directory: '/golem/database/operation/shots/12828/diagnostics/Microwaves/0712Interferometer.ON/results/electron_density_mean'

real	0m0.382s
user	0m0.355s
sys	0m0.023s
=== analysis done === Time: .3829s
Thu Sep 12 17:03:20 CEST 2013
!!! ============== action: postanalysis =======================
LOCAL_PATH /golem/database/operation/tasks/SessionPreparation/2013/120913_1426/170118/analysis/Basics/0612AdvancedAnalysis.ON
Performing advanced discharge postanalysis
/golem/database/pygolem_lite/modules.py:330: RuntimeWarning: invalid value encountered in divide
  if dy/amax(abs(array(yrange))) < 1e-6:   # constant line ...
/golem/database/pygolem_lite/modules.py:330: RuntimeWarning: invalid value encountered in divide
  if dy/amax(abs(array(yrange))) < 1e-6:   # constant line ...
correction on plasma position failed Missing file: /golem/database/operation/shots/12828/diagnostics/Magnetic/0612PlasmaPosition_TO.ON/results/plasma_radius
electron_density failed
electron_density correction failed Missing file: /golem/database/operation/shots/12828/diagnostics/Magnetic/0612PlasmaPosition_TO.ON/results/R_position
saving 1.07316279411
plotting time 1.07s
Some mistake during get_data: Missing file: /golem/database/operation/shots/12828/analysis/Radiation/1212Impurities_TO.ON/data//temperature
saving 0.305197954178
plotting time 0.31s
Some mistake during get_data: Missing file: /golem/database/operation/shots/12828/analysis/Radiation/1212Impurities_TO.ON/data//TotalPower
saving 0.692755937576
plotting time 0.69s
===== plotting done ===== 
[[{'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'Q [-]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  4.00000000e-03,   8.00000000e-03,   2.40000000e-02, ...,
         3.99720000e+01,   3.99840000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Safety factor edge (Q$_{edge}$)'}, 'xstart': 10.050000000000001, 'xend': 18.91, 'data': Data([ nan,  nan,  nan, ...,  nan,  nan,  nan]), 'ylim': [0, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'Q [-]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  4.00000000e-03,   1.20000000e-02,   2.00000000e-02, ...,
         3.99760000e+01,   3.99840000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': '(Q$_{center}$) (peaking factor = 2)'}, 'xstart': 10.050000000000001, 'xend': 18.91, 'data': Data([ nan,  nan,  nan, ...,  nan,  nan,  nan]), 'ylim': [0, None]}, [], []], [{'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': '$\\iota$ [-]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  0.00000000e+00,   1.20000000e-02,   2.00000000e-02, ...,
         3.99720000e+01,   3.99840000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Inverse Safety factor $\\iota_{edge}$'}, 'xstart': 10.050000000000001, 'xend': 18.91, 'data': Data([ nan,  nan,  nan, ...,  nan,  nan,  nan]), 'ylim': [0, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': '$\\iota$ [-]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  0.00000000e+00,   1.20000000e-02,   2.40000000e-02, ...,
         3.99760000e+01,   3.99880000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': ' $\\iota_{center}$ (peaking factor = 2)'}, 'xstart': 10.050000000000001, 'xend': 18.91, 'data': Data([ nan,  nan,  nan, ...,  nan,  nan,  nan]), 'ylim': [0, None]}, [], [], {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': '$\\iota$ [-]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([ 10.05,  18.91]), 'kwargs': {'xerr': None, 'fmt': 'k:', 'yerr': None, 'label': 'Q=2'}, 'xstart': 10.050000000000001, 'xend': 18.91, 'data': array([ 0.5,  0.5]), 'ylim': [0, None]}], [{'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'T [eV]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  0.00000000e+00,   1.20000000e-02,   2.00000000e-02, ...,
         3.99760000e+01,   3.99880000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Electron temperature'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([ nan,  nan,  nan, ...,  nan,  nan,  nan]), 'ylim': [0, None]}, [], None], [{'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  0.00000000e+00,   1.20000000e-02,   2.40000000e-02, ...,
         3.99720000e+01,   3.99880000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Ohmic heating - total'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([ 0.        ,  0.        ,  0.        , ...,  0.00correction on plasma position failed Missing file: /golem/database/operation/shots/12828/diagnostics/Magnetic/0612PlasmaPosition_TO.ON/results/plasma_radius
electron_density failed
electron_density correction failed Missing file: /golem/database/operation/shots/12828/diagnostics/Magnetic/0612PlasmaPosition_TO.ON/results/R_position
saving 0.980499982834
plotting time 0.98s
Some mistake during get_data: Missing file: /golem/database/operation/shots/12828/analysis/Radiation/1212Impurities_TO.ON/data//temperature
saving 0.433084011078
plotting time 0.43s
Some mistake during get_data: Missing file: /golem/database/operation/shots/12828/analysis/Radiation/1212Impurities_TO.ON/data//TotalPower
saving 0.628155946732
plotting time 0.63s
===== plotting done ===== 
[[{'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'Q [-]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  4.00000000e-03,   1.20000000e-02,   2.40000000e-02, ...,
         3.99760000e+01,   3.99880000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Safety factor edge (Q$_{edge}$)'}, 'xstart': 10.050000000000001, 'xend': 18.91, 'data': Data([ nan,  nan,  nan, ...,  nan,  nan,  nan]), 'ylim': [0, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'Q [-]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  0.00000000e+00,   8.00000000e-03,   2.40000000e-02, ...,
         3.99720000e+01,   3.99880000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': '(Q$_{center}$) (peaking factor = 2)'}, 'xstart': 10.050000000000001, 'xend': 18.91, 'data': Data([ nan,  nan,  nan, ...,  nan,  nan,  nan]), 'ylim': [0, None]}, [], []], [{'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': '$\\iota$ [-]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  0.00000000e+00,   1.20000000e-02,   2.40000000e-02, ...,
         3.99720000e+01,   3.99840000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Inverse Safety factor $\\iota_{edge}$'}, 'xstart': 10.050000000000001, 'xend': 18.91, 'data': Data([ nan,  nan,  nan, ...,  nan,  nan,  nan]), 'ylim': [0, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': '$\\iota$ [-]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  4.00000000e-03,   1.20000000e-02,   2.40000000e-02, ...,
         3.99760000e+01,   3.99880000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': ' $\\iota_{center}$ (peaking factor = 2)'}, 'xstart': 10.050000000000001, 'xend': 18.91, 'data': Data([ nan,  nan,  nan, ...,  nan,  nan,  nan]), 'ylim': [0, None]}, [], [], {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': '$\\iota$ [-]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([ 10.05,  18.91]), 'kwargs': {'xerr': None, 'fmt': 'k:', 'yerr': None, 'label': 'Q=2'}, 'xstart': 10.050000000000001, 'xend': 18.91, 'data': array([ 0.5,  0.5]), 'ylim': [0, None]}], [{'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'T [eV]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  4.00000000e-03,   1.20000000e-02,   2.00000000e-02, ...,
         3.99720000e+01,   3.99880000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Electron temperature'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([ nan,  nan,  nan, ...,  nan,  nan,  nan]), 'ylim': [0, None]}, [], None], [{'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  4.00000000e-03,   8.00000000e-03,   2.40000000e-02, ...,
         3.99760000e+01,   3.99880000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Ohmic heating - total'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([ 0.        ,  0.        ,  0.        , ...,  0.0058524,
        0.0005998 ,  0.00060708]), 'ylim': [None, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  4.00000000e-03,   8.00000000e-03,   2.00000000e-02, ...,
         3.99760000e+01,   3.99840000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Ohmic heating - magnetic'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([  2.10924718e-11,  -8.73250983e-11,   3.04024472e-12, ...,
         1.98704357e-02,  -3.85449562e-02,  -6.86135925e-01]), 'ylim': [None, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  4.00000000e-03,   8.00000000e-03,   2.00000000e-02, ...,
         3.99720000e+01,   3.99840000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Ohmic heating - plasma'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([-0.        ,  0.        , -0.        , ...,  0.00423487,
        0.05501934,  0.69114215]), 'ylim': [None, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  4.00000000e-03,   1.20000000e-02,   2.00000000e-02, ...,
         3.99720000e+01,   3.99880000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Ohmic heating - chamber'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([ -2.10924718e-11,  -1.14912829e-10,  -3.04024472e-12, ...,
        -1.67971916e-02,  -1.32013884e-02,  -4.39917660e-03]), 'ylim': [None, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  0.00000000e+00,   1.20000000e-02,   2.40000000e-02, ...,
         3.99760000e+01,   3.99880000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'fmt': 'k--', 'yerr': None, 'label': 'Output power (diod)'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([ 0.04423449,  0.04372269,  0.0417064 , ..., -0.18006773,
       -0.176303  , -0.17462145]), 'ylim': [None, None]}, None, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([ 10.05,  18.91]), 'kwargs': {'xerr': None, 'fmt': 'k:', 'yerr': None, 'label': ''}, 'xstart': 10.05, 'xend': 18.91, 'data': array([0, 0]), 'ylim': [None, None]}]]
saving 0.314940214157
plotting time 0.31s

real	0m3.883s
user	0m3.529s
sys	0m0.219s
Thu Sep 12 17:03:24 CEST 2013 ============== action: clean =======================
make: *** No rule to make target `clean'.  Stop.
make: Entering directory `/golem/database/operation/tasks/SessionPreparation/2013/120913_1426/170118/analysis/Basics/0612AdvancedAnalysis.ON'
make: *** No rule to make target `clean'.  Stop.
make: Leaving directory `/golem/database/operation/tasks/SessionPreparation/2013/120913_1426/170118/analysis/Basics/0612AdvancedAnalysis.ON'
=== plots === Time: 3.887s
0058891,
        0.0005998 ,  0.00060708]), 'ylim': [None, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  0.00000000e+00,   1.20000000e-02,   2.00000000e-02, ...,
         3.99760000e+01,   3.99840000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Ohmic heating - magnetic'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([  9.58031876e-11,   1.14912829e-10,   3.04024472e-12, ...,
         1.98704357e-02,  -3.85449562e-02,  -6.86135925e-01]), 'ylim': [None, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  0.00000000e+00,   1.20000000e-02,   2.40000000e-02, ...,
         3.99720000e+01,   3.99880000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Ohmic heating - plasma'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([-0.        , -0.        , -0.        , ...,  0.00423487,
        0.20409875,  0.69114215]), 'ylim': [None, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  0.00000000e+00,   8.00000000e-03,   2.40000000e-02, ...,
         3.99760000e+01,   3.99840000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'yerr': None, 'label': 'Ohmic heating - chamber'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([ -9.58031876e-11,   8.73250983e-11,  -1.01685224e-10, ...,
        -1.69153690e-02,  -1.58781881e-02,  -4.39917660e-03]), 'ylim': [None, None]}, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([  0.00000000e+00,   1.20000000e-02,   2.00000000e-02, ...,
         3.99720000e+01,   3.99840000e+01,   3.99960000e+01]), 'kwargs': {'xerr': None, 'fmt': 'k--', 'yerr': None, 'label': 'Output power (diod)'}, 'xstart': 10.05, 'xend': 18.91, 'data': Data([ 0.04423449,  0.04372269,  0.04253529, ..., -0.18139004,
       -0.17746015, -0.17462145]), 'ylim': [None, None]}, None, {'ygrid': False, 'vlines': [], 'xlim': array([ 10.05,  18.91]), 'yscale': '', 'ylabel': 'P [kW]', 'xgrid': False, 'annotate': [], 'xlabel': 'Time [ms]', 'tvec': array([ 10.05,  18.91]), 'kwargs': {'xerr': None, 'fmt': 'k:', 'yerr': None, 'label': ''}, 'xstart': 10.05, 'xend': 18.91, 'data': array([0, 0]), 'ylim': [None, None]}]]
saving 0.796777009964
plotting time 0.80s

real	0m4.059s
user	0m3.424s
sys	0m0.185s
=== postanalysis === Time: 4.060s