ó
ÈÅðQc           @   s×  d  d l  Td  d l  m Z d  d l Z d  d l m Z d  d l  m Z d  d l Z d e j d <d  d l Td  d l m	 Z	 d  d l
 m Z m Z m Z d  d	 l m Z d  d l  Td  d l Td  d l Td  d l Z d
 „  Z d „  Z d „  Z d „  Z xÝe d d ƒ D]ÌZ d Ge GHy e d e e ƒ d ƒ Z Wn
 qn Xy@ e d e e ƒ d ƒ d Z e d e e ƒ d ƒ d Z Wn d Z d Z n Xe e d d ƒ Z e e d d ƒ Z d e  e ƒ Z! d Z" e# e e$ e" e! ƒ d e$ e" e! ƒ d !ƒ e e$ e" e! ƒ d e$ e" e! ƒ d +e% e& e  e ƒ ƒ e! e ƒ e' d e ƒ e' d e ƒ e( d  d ƒ e e$ e e! ƒ e$ e e! ƒ !Z e% e& e$ e e! ƒ e$ e e! ƒ ƒ e! e ƒ e) d e e ƒ d ƒ e* ƒ  d Z+ d Z, d Z- d Z. d  Z/ e e d  d ƒ Z0 e  e0 ƒ d k r d! GHqn  e1 e0 d d … d f e2 e  e0 ƒ ƒ ƒ e3 d" ƒ e4 d# ƒ e5 d e6 e0 d d … d f ƒ g ƒ e) d e e ƒ d$ ƒ e* ƒ  e7 e e e. k <e e e0 d d … d f e0 d d … d f e- d% e, ƒ Z8 e9 d& e8 ƒ e% e8 ƒ e) d e e ƒ d' ƒ e* ƒ  e) e e e8 e+ e/ e, ƒ \ Z: Z; e: e, :Z: e e: d( d ƒ Z0 e1 e0 d d … d f e2 e  e0 ƒ ƒ ƒ e5 d e6 e0 d d … d f ƒ g ƒ e) d e e ƒ d) ƒ e* ƒ  qWd S(*   iÿÿÿÿ(   t   *(   t   linalgN(   t   sparset   Qt4Aggt   backend(   t   interp1d(   t   choleskyt   analyzet   cholesky_AAt(   t   repmatc         C   s*   t  t |  t  |  d d ƒƒ d d ƒd S(   Nt   axisi    g®Gáz®÷?(   t   mediant   abs(   t   x(    (    s_   /golem/database/velin//includes/diagnostics/Radiation/0612HXR.ON/deconvolution/deconvolution.pyt   <lambda>,   s    c         C   s‹  t  |  ƒ }  t |  ƒ } t ƒ  } t |  ƒ } |  t |  ƒ 8}  x;|  | | k rz|  | } | } | } x2 | d k rš |  | |  | d k rš | d 8} qi Wx< | d t |  ƒ k  rÙ |  | |  | d k rÙ | d 7} qž Wt | | d ƒ }	 | |  | d |  | d |  | d d | |  | d d 8} t |  |	 ƒ }
 d |  |	 <t |  ƒ } | | k  r@ | j | |
 f ƒ q@ q@ Wt	 | d t
 ƒS(   sN   
identifikuje to peak jeden po druhÃ©m od nejvÄ›tÅ¡Ã­ho po nejmeÅ¡Ã­
    
    i    i   i   t   copy(   R   t   argmaxt   listt   MADR   t   lent   aranget   sumt   appendt   arrayt   False(   t   signalt   threshold_mint   threshold_maxt   x0t   peakst   stdt   at   xlt   xrt   intervt   area(    (    s_   /golem/database/velin//includes/diagnostics/Radiation/0612HXR.ON/deconvolution/deconvolution.pyt   peaksCounter/   s*    	
'1B
c         C   s  t  |  ƒ }  t |  ƒ } |  t |  | ƒ 8}  t |  ƒ } t | ƒ } | | } | | }	 t j | |	 f ƒ }
 x³ t | ƒ D]¥ } t t | | d ƒ d ƒ } t	 t | | d ƒ | ƒ } t | | t
 | | ƒ | ƒ } x@ t | | ƒ D]. } | | |
 | | | | | | d f <qî Wq{ Wt t d | ƒ d | | d d ƒ} | t |
 ƒ }
 t d |	 f ƒ } | d d  d  … f c d 9<t | d
 |	 |	 d d ƒ} | j | } |
 j |
 } t j | j ƒ  ƒ } t |
 j |
 | | d	 | ƒ } t | |
 j |  ƒ ƒ } t  | ƒ S(   Ni   i    iP   i   t   formatt   csri   iÿÿÿÿg     ˆÃ@(   i    i   (   R   t   isnanR   R   R   t
   lil_matrixt   ranget   maxt   intt   mint   floort   spdiagst   int_t
   csc_matrixt   onest   TR   t   normt   todenseR   t   squeeze(   t   datat
   events_post   events_areat
   peak_widtht   lamt   upsamplet   i_nant   nt   n_peakst   npixt   Events_matrixt   it   lt   rt   st   jt   nogapst	   diag_datat   Dt   DDt   EEt   normEEt   factort   g(    (    s_   /golem/database/velin//includes/diagnostics/Radiation/0612HXR.ON/deconvolution/deconvolution.pyt   back_deconvolutionV   s2    

"0%#c   #   
   C   sà  t  j  ƒ  } d | d } t |  ƒ } t | ƒ } |  t |  ƒ 8}  | t t | ƒ ƒ :} | | 9} | | d | } t | ƒ }	 |  |	 | | d | | d +t |  t |  ƒ | d  ƒ |	 | | d d *t |  t |  ƒ | d ƒ |	 | | d d )t d | | d | d ƒ }
 t |	 ƒ } d |	 | <t | | ƒ } t	 |	 ƒ } | | } t t
 | ƒ | d t
 | ƒ d ƒ } t | d  d  d … | d ƒ j } t | | | | d d ƒ} t t | | ƒ t d | ƒ d d ƒ} | | } | } |	 } t t j t | d g ƒ ƒ t j | | d f ƒ g d d ƒ} | j | } t | ƒ } t t d d | ƒ d ƒ } xwt t |
 ƒ d ƒ D]_} t  j  ƒ  } t | ƒ } | |
 | |
 | d !} t t | ƒ d | | d d ƒ} t  j  ƒ  } t | d ƒ } t | t | d d ƒƒ } t  j  ƒ  } x™ t d ƒ D]‹ }  t j | d | | ƒ } | j | | | ƒ t | | j | |
 | |
 | d !ƒ ƒ } t | ƒ }! d	 |! |! d	 k  <t |! ƒ |! } q-W| | }" t |" d
 k ƒ r2t |" t |" ƒ ƒ t t |" t |" ƒ ƒ ƒ d Gt | ƒ Gt t |" t |" ƒ ƒ ƒ GHn  | t | ƒ d t | ƒ d !| |
 | |
 | d d | |
 | d |
 | d d | +|" t |" ƒ d t |" ƒ d !| |
 | |
 | d d |
 | d |
 | d d +q…Wt  j  ƒ  | GH| | | d | | | d | !} | | | d | | d !} | | | d | | d !} t  t d | | | ƒ | | d d ƒt  t d | | ƒ |  d d ƒt  t d | | ƒ | d d ƒt  | ƒ t! ƒ  t" ƒ  | | f S(   Ni   i   i    iÿÿÿÿR%   t   cscR&   i   g{®Gáz„?gš™™™™™É?i   t   labelt   deconvt   rawt   retrofit(#   t   timeR   R   R   R   t   emptyR'   R   t   zerost
   zeros_likeR   R	   R2   R.   t   kront   eyet   hstackR   R0   R1   t   expt   linspaceR)   R/   t   repeatR   t   identityt   cholesky_inplaceR5   R   t   meant   anyt   plott   legendt   show(#   R6   t   responset   winR:   R;   t   t_startR=   t   n_respt   n_extt
   ext_signalt	   intervalsR<   RQ   RS   R?   t   diagsRG   t
   ConvMatrixt   ReductMatrixR2   t   fR   t   TT_RM   RA   t   t0t   Wt	   i_nan_wint   gapst   tt   i_nan_gRL   RE   t   g_tmpt   f_i(    (    s_   /golem/database/velin//includes/diagnostics/Radiation/0612HXR.ON/deconvolution/deconvolution.pyt   deconvolutionŠ   sz    
/0

'"'
@!,
Z]Y&'
i    i   t   shot_nums   ./data/s   /HXR_s   /PlasmaStartiè  s
   /PlasmaEndg{®Gáz¤?gü©ñÒMbP?g{®Gázt?id   iÈ   R   i
   s	   ./graphs/s	   _data.pngiX  gš™™™™™¹?s   any radiations
   counts [-]s   energy [keV]s   historogram_.pngg     @@t   response_funs   response_fun.pnggš™™™™™É?s   historogram.png(<   t   numpyR   RT   t   scipyR   t
   matplotlibt   rcParamst   matplotlib.pyplott   scipy.interpolateR   t   scikits.sparse.cholmodR   R   R   t   numpy.matlibR	   t   scipy.sparseR   R$   RN   Ry   R)   Rz   t   loadtxtt   strR6   t   plasma_startt
   plasma_endR*   t   plasma_start_advR,   t   plasma_end_advR   t   dtt
   Bt_triggerR   R+   Rb   R   t   axvlinet   ylimt   savefigt   closeRf   R;   t	   peakwidtht	   DAS_limitt   regularizationR   t   histt   sqrtt   ylabelt   xlabelt   xlimt   amaxt   nanR{   t   savetxtRQ   RS   (    (    (    s_   /golem/database/velin//includes/diagnostics/Radiation/0612HXR.ON/deconvolution/deconvolution.pyt   <module>   s   




		'	4	Š	"
R!.)

&;

)&