Mon Nov 12 07:56:40 CET 2018
============== action: acquisition =======================

real	0m0.001s
user	0m0.000s
sys	0m0.000s
=== acquisition done === Time: .0016s
Mon Nov 12 07:56:40 CET 2018
============== action: analysis =======================
Performing advanced discharge analysis
I 0.000742698
B 0.148174
P 7.16542
n 0.0
R 0.4
Aspect 0.25
confinent time =  0.0

real	0m0.682s
user	0m0.552s
sys	0m0.084s
=== analysis done === Time: .6823s
Mon Nov 12 07:56:41 CET 2018
!!! ============== action: postanalysis =======================
LOCAL_PATH /golem/database/operation/tasks/Training/2018/121118_0733/075443/analysis/Basics/0612AdvancedAnalysis.ON
Performing advanced discharge postanalysis
Monmain.py:165: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:165: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:166: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:166: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:169: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu1[ne_corr_nu1>1.5] = nan
main.py:170: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu0_5[ne_corr_nu0_5>1.5] = nan
main.py:187: RuntimeWarning: invalid value encountered in greater
  safety_factor[safety_factor >  2* nanmedian(safety_factor[ind_plasma])] = nan
main.py:165: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:165: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:166: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:166: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:169: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu1[ne_corr_nu1>1.5] = nan
main.py:170: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu0_5[ne_corr_nu0_5>1.5] = nan
main.py:187: RuntimeWarning: invalid value encountered in greater
  safety_factor[safety_factor >  2* nanmedian(safety_factor[ind_plasma])] = nan
convert: Expected 8192 bytes; found 7991 bytes `plot_1.png' @ warning/png.c/MagickPNGWarningHandler/1669.
convert: Read Exception `plot_1.png' @ error/png.c/MagickPNGErrorHandler/1643.
convert: corrupt image `plot_1.png' @ error/png.c/ReadPNGImage/3987.
convert: no images defined `plot_1.png' @ error/convert.c/ConvertImageCommand/3210.
/golem/database/pygolem_lite/modules.py:342: RuntimeWarning: invalid value encountered in divide
  if dy/amax(abs(array(yrange))) < 1e-6:   # constant line ...
/golem/database/pygolem_lite/modules.py:342: RuntimeWarning: invalid value encountered in divide
  if dy/amax(abs(array(yrange))) < 1e-6:   # constant line ...
main.py:249: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 1$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]' ,data_rescale= 1e-19/ne_corr_nu1, fmt='k--', **params) if 'ne_corr_nu1' in locals() else [],
/golem/database/pygolem_lite/modules.py:468: RuntimeWarning: invalid value encountered in multiply
  data *= data_rescale
main.py:250: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 0.5$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]', data_rescale= 1e-19/ne_corr_nu0_5, fmt='k:', **params) if 'ne_corr_nu0_5' in locals() else [] ]
main.py:249: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 1$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]' ,data_rescale= 1e-19/ne_corr_nu1, fmt='k--', **params) if 'ne_corr_nu1' in locals() else [],
/golem/database/pygolem_lite/modules.py:468: RuntimeWarning: invalid value encountered in multiply
  data *= data_rescale
main.py:250: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 0.5$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]', data_rescale= 1e-19/ne_corr_nu0_5, fmt='k:', **params) if 'ne_corr_nu0_5' in locals() else [] ]
======= mean(isnan(corr))  0.101209135692
plotting time 1.48s
Some mistake during get_data: Missing file: /golem/database/operation/shots/28495/analysis/Radiation/1212Impurities_TO.ON/data//temperature
plotting time 0.98s
Some mistake during get_data: Missing file: /golem/database/operation/shots/28495/analysis/Radiation/1212Impurities_TO.ON/data//TotalPower
plotting time 1.24s
plotting time 1.06s
===== plotting done ===== 
plotting time 0.61s

real	0m8.177s
user	0m6.052s
sys	0m0.388s
=== postanalysis === Time: 8,178s
======= mean(isnan(corr))  0.101209135692
plotting time 1.28s
Some mistake during get_data: Missing file: /golem/database/operation/shots/28495/analysis/Radiation/1212Impurities_TO.ON/data//temperature
plotting time 0.98s
Some mistake during get_data: Missing file: /golem/database/operation/shots/28495/analysis/Radiation/1212Impurities_TO.ON/data//TotalPower
plotting time 0.99s
plotting time 1.46s
===== plotting done ===== 
plotting time 0.54s

real	0m8.023s
user	0m5.972s
sys	0m0.396s
Mon Nov 12 07:56:49 CET 2018 ============== action: clean =======================
make: *** No rule to make target 'clean'.  Stop.
make: Entering directory '/golem/database/operation/tasks/Training/2018/121118_0733/075443/analysis/Basics/0612AdvancedAnalysis.ON'
make: *** No rule to make target 'clean'.  Stop.
make: Leaving directory '/golem/database/operation/tasks/Training/2018/121118_0733/075443/analysis/Basics/0612AdvancedAnalysis.ON'
=== plots === Time: 8,027s
Mon Nov 12 07:57:02 CET 2018
!!! ============== action: postanalysis =======================
LOCAL_PATH /golem/database/operation/tasks/Training/2018/121118_0733/075443/analysis/Basics/0612AdvancedAnalysis.ON
Performing advanced discharge postanalysis
main.py:165: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:165: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:166: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:166: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:169: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu1[ne_corr_nu1>1.5] = nan
main.py:170: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu0_5[ne_corr_nu0_5>1.5] = nan
main.py:187: RuntimeWarning: invalid value encountered in greater
  safety_factor[safety_factor >  2* nanmedian(safety_factor[ind_plasma])] = nan
/golem/database/pygolem_lite/modules.py:342: RuntimeWarning: invalid value encountered in divide
  if dy/amax(abs(array(yrange))) < 1e-6:   # constant line ...
main.py:249: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 1$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]' ,data_rescale= 1e-19/ne_corr_nu1, fmt='k--', **params) if 'ne_corr_nu1' in locals() else [],
/golem/database/pygolem_lite/modules.py:468: RuntimeWarning: invalid value encountered in multiply
  data *= data_rescale
main.py:250: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 0.5$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]', data_rescale= 1e-19/ne_corr_nu0_5, fmt='k:', **params) if 'ne_corr_nu0_5' in locals() else [] ]
======= mean(isnan(corr))  0.101209135692
plotting time 1.14s
plotting time 0.43s
plotting time 0.69s
plotting time 0.80s
===== plotting done ===== 
plotting time 0.45s

real	0m5.666s
user	0m4.876s
sys	0m0.272s
=== postanalysis === Time: 5,668s