Wed Jun 26 17:55:33 CEST 2019 ============== action: acquisition ======================= real 0m0.001s user 0m0.000s sys 0m0.000s === acquisition done === Time: .0023s Wed Jun 26 17:55:33 CEST 2019 ============== action: analysis ======================= Performing advanced discharge analysis I 0.0029678 B 0.32312 P 21.38 n 0.0553254 R 0.4 Aspect 0.25 confinent time = 0.574463239473 real 0m0.716s user 0m0.556s sys 0m0.088s === analysis done === Time: .7165s Wed Jun 26 17:55:34 CEST 2019 !!! ============== action: postanalysis ======================= LOCAL_PATH /golem/database/operation/tasks/TrainingCourses/Universities/CTU.cz/PRPL/19AndreaKol_REs/0619Stineni/260619_0935/175243/analysis/Basics/0612AdvancedAnalysis.ON Performing advanced discharge postanalysis Wedmain.py:165: RuntimeWarning: divide by zero encountered in divide ne_corr_nu1 = r0/a*(pos_part(1-R/r0))**1.5 #peaking factor 1; profile = (1-(r/a)^2) main.py:165: RuntimeWarning: invalid value encountered in multiply ne_corr_nu1 = r0/a*(pos_part(1-R/r0))**1.5 #peaking factor 1; profile = (1-(r/a)^2) main.py:166: RuntimeWarning: divide by zero encountered in divide ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0)) #peaking factor 0.5; profile = sqrt(1-(r/a)^2) main.py:166: RuntimeWarning: invalid value encountered in multiply ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0)) #peaking factor 0.5; profile = sqrt(1-(r/a)^2) main.py:169: RuntimeWarning: invalid value encountered in greater ne_corr_nu1[ne_corr_nu1>1.5] = nan main.py:170: RuntimeWarning: invalid value encountered in greater ne_corr_nu0_5[ne_corr_nu0_5>1.5] = nan main.py:165: RuntimeWarning: divide by zero encountered in divide ne_corr_nu1 = r0/a*(pos_part(1-R/r0))**1.5 #peaking factor 1; profile = (1-(r/a)^2) main.py:165: RuntimeWarning: invalid value encountered in multiply ne_corr_nu1 = r0/a*(pos_part(1-R/r0))**1.5 #peaking factor 1; profile = (1-(r/a)^2) main.py:166: RuntimeWarning: divide by zero encountered in divide ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0)) #peaking factor 0.5; profile = sqrt(1-(r/a)^2) main.py:166: RuntimeWarning: invalid value encountered in multiply ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0)) #peaking factor 0.5; profile = sqrt(1-(r/a)^2) main.py:169: RuntimeWarning: invalid value encountered in greater ne_corr_nu1[ne_corr_nu1>1.5] = nan main.py:170: RuntimeWarning: invalid value encountered in greater ne_corr_nu0_5[ne_corr_nu0_5>1.5] = nan main.py:187: RuntimeWarning: invalid value encountered in greater safety_factor[safety_factor > 2* nanmedian(safety_factor[ind_plasma])] = nan main.py:187: RuntimeWarning: invalid value encountered in greater safety_factor[safety_factor > 2* nanmedian(safety_factor[ind_plasma])] = nan convert: Expected 8192 bytes; found 8054 bytes `plot_1.png' @ warning/png.c/MagickPNGWarningHandler/1669. convert: Read Exception `plot_1.png' @ error/png.c/MagickPNGErrorHandler/1643. convert: corrupt image `plot_1.png' @ error/png.c/ReadPNGImage/3974. convert: no images defined `plot_1.png' @ error/convert.c/ConvertImageCommand/3210. /golem/database/pygolem_lite/modules.py:342: RuntimeWarning: invalid value encountered in divide if dy/amax(abs(array(yrange))) < 1e-6: # constant line ... /golem/database/pygolem_lite/modules.py:342: RuntimeWarning: invalid value encountered in divide if dy/amax(abs(array(yrange))) < 1e-6: # constant line ... main.py:249: RuntimeWarning: divide by zero encountered in divide get_data('electron_density', '$n_e$ - position corrected, $\\nu = 1$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]' ,data_rescale= 1e-19/ne_corr_nu1, fmt='k--', **params) if 'ne_corr_nu1' in locals() else [], main.py:250: RuntimeWarning: divide by zero encountered in divide get_data('electron_density', '$n_e$ - position corrected, $\\nu = 0.5$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]', data_rescale= 1e-19/ne_corr_nu0_5, fmt='k:', **params) if 'ne_corr_nu0_5' in locals() else [] ] main.py:249: RuntimeWarning: divide by zero encountered in divide get_data('electron_density', '$n_e$ - position corrected, $\\nu = 1$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]' ,data_rescale= 1e-19/ne_corr_nu1, fmt='k--', **params) if 'ne_corr_nu1' in locals() else [], main.py:250: RuntimeWarning: divide by zero encountered in divide get_data('electron_density', '$n_e$ - position corrected, $\\nu = 0.5$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]', data_rescale= 1e-19/ne_corr_nu0_5, fmt='k:', **params) if 'ne_corr_nu0_5' in locals() else [] ] ======= mean(isnan(corr)) 0.296669121859 plotting time 1.36s Some mistake during get_data: Missing file: /golem/database/operation/shots/31050/analysis/Radiation/1212Impurities_TO.ON/data//temperature plotting time 0.39s Some mistake during get_data: Missing file: /golem/database/operation/shots/31050/analysis/Radiation/1212Impurities_TO.ON/data//TotalPower plotting time 1.10s plotting time 1.53s ===== plotting done ===== plotting time 0.58s real 0m8.208s user 0m7.640s sys 0m0.380s Wed Jun 26 17:55:42 CEST 2019 ============== action: clean ======================= make: *** No rule to make target 'clean'. Stop. make: Entering directory '/golem/database/operation/tasks/TrainingCourses/Universities/CTU.cz/PRPL/19AndreaKol_REs/0619Stineni/260619_0935/175243/analysis/Basics/0612AdvancedAnalysis.ON' make: *** No rule to make target 'clean'. Stop. make: Leaving directory '/golem/database/operation/tasks/TrainingCourses/Universities/CTU.cz/PRPL/19AndreaKol_REs/0619Stineni/260619_0935/175243/analysis/Basics/0612AdvancedAnalysis.ON' === plots === Time: 8,212s ======= mean(isnan(corr)) 0.296669121859 plotting time 1.34s Some mistake during get_data: Missing file: /golem/database/operation/shots/31050/analysis/Radiation/1212Impurities_TO.ON/data//temperature plotting time 0.43s Some mistake during get_data: Missing file: /golem/database/operation/shots/31050/analysis/Radiation/1212Impurities_TO.ON/data//TotalPower plotting time 1.14s plotting time 1.75s ===== plotting done ===== plotting time 0.77s real 0m8.591s user 0m7.804s sys 0m0.420s === postanalysis === Time: 8,592s Wed Jun 26 17:56:45 CEST 2019 !!! ============== action: postanalysis ======================= LOCAL_PATH /golem/database/operation/tasks/TrainingCourses/Universities/CTU.cz/PRPL/19AndreaKol_REs/0619Stineni/260619_0935/175243/analysis/Basics/0612AdvancedAnalysis.ON Performing advanced discharge postanalysis main.py:165: RuntimeWarning: divide by zero encountered in divide ne_corr_nu1 = r0/a*(pos_part(1-R/r0))**1.5 #peaking factor 1; profile = (1-(r/a)^2) main.py:165: RuntimeWarning: invalid value encountered in multiply ne_corr_nu1 = r0/a*(pos_part(1-R/r0))**1.5 #peaking factor 1; profile = (1-(r/a)^2) main.py:166: RuntimeWarning: divide by zero encountered in divide ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0)) #peaking factor 0.5; profile = sqrt(1-(r/a)^2) main.py:166: RuntimeWarning: invalid value encountered in multiply ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0)) #peaking factor 0.5; profile = sqrt(1-(r/a)^2) main.py:169: RuntimeWarning: invalid value encountered in greater ne_corr_nu1[ne_corr_nu1>1.5] = nan main.py:170: RuntimeWarning: invalid value encountered in greater ne_corr_nu0_5[ne_corr_nu0_5>1.5] = nan main.py:187: RuntimeWarning: invalid value encountered in greater safety_factor[safety_factor > 2* nanmedian(safety_factor[ind_plasma])] = nan /golem/database/pygolem_lite/modules.py:342: RuntimeWarning: invalid value encountered in divide if dy/amax(abs(array(yrange))) < 1e-6: # constant line ... main.py:249: RuntimeWarning: divide by zero encountered in divide get_data('electron_density', '$n_e$ - position corrected, $\\nu = 1$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]' ,data_rescale= 1e-19/ne_corr_nu1, fmt='k--', **params) if 'ne_corr_nu1' in locals() else [], main.py:250: RuntimeWarning: divide by zero encountered in divide get_data('electron_density', '$n_e$ - position corrected, $\\nu = 0.5$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]', data_rescale= 1e-19/ne_corr_nu0_5, fmt='k:', **params) if 'ne_corr_nu0_5' in locals() else [] ] ======= mean(isnan(corr)) 0.296669121859 plotting time 1.25s Some mistake during get_data: Missing file: /golem/database/operation/shots/31050/analysis/Radiation/1212Impurities_TO.ON/data//temperature plotting time 0.40s Some mistake during get_data: Missing file: /golem/database/operation/shots/31050/analysis/Radiation/1212Impurities_TO.ON/data//TotalPower plotting time 0.62s plotting time 1.09s ===== plotting done ===== plotting time 0.58s real 0m6.340s user 0m5.508s sys 0m0.344s === postanalysis === Time: 6,341s