Wed Jun 26 18:19:30 CEST 2019
============== action: acquisition =======================

real	0m0.001s
user	0m0.000s
sys	0m0.000s
=== acquisition done === Time: .0014s
Wed Jun 26 18:19:30 CEST 2019
============== action: analysis =======================
Performing advanced discharge analysis
I 0.00115576
B 0.255444
P 12.6793
n 0.0274055
R 0.4
Aspect 0.25
confinent time =  0.248049702649

real	0m0.641s
user	0m0.580s
sys	0m0.056s
=== analysis done === Time: .6418s
Wed Jun 26 18:19:31 CEST 2019
!!! ============== action: postanalysis =======================
LOCAL_PATH /golem/database/operation/tasks/TrainingCourses/Universities/CTU.cz/PRPL/19AndreaKol_REs/0619Stineni/260619_0935/181649/analysis/Basics/0612AdvancedAnalysis.ON
Performing advanced discharge postanalysis
Wedmain.py:165: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:165: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:166: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:166: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:169: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu1[ne_corr_nu1>1.5] = nan
main.py:170: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu0_5[ne_corr_nu0_5>1.5] = nan
main.py:187: RuntimeWarning: invalid value encountered in greater
  safety_factor[safety_factor >  2* nanmedian(safety_factor[ind_plasma])] = nan
main.py:165: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:165: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:166: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:166: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:169: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu1[ne_corr_nu1>1.5] = nan
main.py:170: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu0_5[ne_corr_nu0_5>1.5] = nan
main.py:187: RuntimeWarning: invalid value encountered in greater
  safety_factor[safety_factor >  2* nanmedian(safety_factor[ind_plasma])] = nan
/golem/database/pygolem_lite/modules.py:342: RuntimeWarning: invalid value encountered in divide
  if dy/amax(abs(array(yrange))) < 1e-6:   # constant line ...
/golem/database/pygolem_lite/modules.py:342: RuntimeWarning: invalid value encountered in divide
  if dy/amax(abs(array(yrange))) < 1e-6:   # constant line ...
main.py:249: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 1$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]' ,data_rescale= 1e-19/ne_corr_nu1, fmt='k--', **params) if 'ne_corr_nu1' in locals() else [],
main.py:250: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 0.5$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]', data_rescale= 1e-19/ne_corr_nu0_5, fmt='k:', **params) if 'ne_corr_nu0_5' in locals() else [] ]
convert: IDAT: CRC error `plot_3.png' @ error/png.c/MagickPNGErrorHandler/1643.
convert: corrupt image `plot_3.png' @ error/png.c/ReadPNGImage/3974.
convert: no images defined `plot_3.png' @ error/convert.c/ConvertImageCommand/3210.
main.py:249: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 1$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]' ,data_rescale= 1e-19/ne_corr_nu1, fmt='k--', **params) if 'ne_corr_nu1' in locals() else [],
main.py:250: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 0.5$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]', data_rescale= 1e-19/ne_corr_nu0_5, fmt='k:', **params) if 'ne_corr_nu0_5' in locals() else [] ]
======= mean(isnan(corr))  0.0718666666667
plotting time 1.20s
Some mistake during get_data: Missing file: /golem/database/operation/shots/31055/analysis/Radiation/1212Impurities_TO.ON/data//temperature
plotting time 0.56s
Some mistake during get_data: Missing file: /golem/database/operation/shots/31055/analysis/Radiation/1212Impurities_TO.ON/data//TotalPower
plotting time 1.05s
plotting time 1.39s
===== plotting done ===== 
plotting time 0.53s

real	0m8.050s
user	0m7.208s
sys	0m0.428s
=== postanalysis === Time: 8,051s
======= mean(isnan(corr))  0.0718666666667
plotting time 1.17s
Some mistake during get_data: Missing file: /golem/database/operation/shots/31055/analysis/Radiation/1212Impurities_TO.ON/data//temperature
plotting time 0.60s
Some mistake during get_data: Missing file: /golem/database/operation/shots/31055/analysis/Radiation/1212Impurities_TO.ON/data//TotalPower
plotting time 0.90s
plotting time 1.45s
===== plotting done ===== 
plotting time 0.55s

real	0m8.022s
user	0m7.348s
sys	0m0.392s
Wed Jun 26 18:19:39 CEST 2019 ============== action: clean =======================
make: *** No rule to make target 'clean'.  Stop.
make: Entering directory '/golem/database/operation/tasks/TrainingCourses/Universities/CTU.cz/PRPL/19AndreaKol_REs/0619Stineni/260619_0935/181649/analysis/Basics/0612AdvancedAnalysis.ON'
make: *** No rule to make target 'clean'.  Stop.
make: Leaving directory '/golem/database/operation/tasks/TrainingCourses/Universities/CTU.cz/PRPL/19AndreaKol_REs/0619Stineni/260619_0935/181649/analysis/Basics/0612AdvancedAnalysis.ON'
=== plots === Time: 8,025s
Wed Jun 26 18:20:42 CEST 2019
!!! ============== action: postanalysis =======================
LOCAL_PATH /golem/database/operation/tasks/TrainingCourses/Universities/CTU.cz/PRPL/19AndreaKol_REs/0619Stineni/260619_0935/181649/analysis/Basics/0612AdvancedAnalysis.ON
Performing advanced discharge postanalysis
main.py:165: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:165: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu1   = r0/a*(pos_part(1-R/r0))**1.5  #peaking factor 1; profile = (1-(r/a)^2)
main.py:166: RuntimeWarning: divide by zero encountered in divide
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:166: RuntimeWarning: invalid value encountered in multiply
  ne_corr_nu0_5 = r0/a*(pos_part(1-R/r0))  #peaking factor 0.5; profile = sqrt(1-(r/a)^2)
main.py:169: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu1[ne_corr_nu1>1.5] = nan
main.py:170: RuntimeWarning: invalid value encountered in greater
  ne_corr_nu0_5[ne_corr_nu0_5>1.5] = nan
main.py:187: RuntimeWarning: invalid value encountered in greater
  safety_factor[safety_factor >  2* nanmedian(safety_factor[ind_plasma])] = nan
/golem/database/pygolem_lite/modules.py:342: RuntimeWarning: invalid value encountered in divide
  if dy/amax(abs(array(yrange))) < 1e-6:   # constant line ...
main.py:249: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 1$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]' ,data_rescale= 1e-19/ne_corr_nu1, fmt='k--', **params) if 'ne_corr_nu1' in locals() else [],
main.py:250: RuntimeWarning: divide by zero encountered in divide
  get_data('electron_density', '$n_e$ - position corrected, $\\nu = 0.5$', 'n$_{e}$ [10$^{19}\cdot$m$^{-3}$]', data_rescale= 1e-19/ne_corr_nu0_5, fmt='k:', **params) if 'ne_corr_nu0_5' in locals() else [] ]
======= mean(isnan(corr))  0.0718666666667
plotting time 1.32s
Some mistake during get_data: Missing file: /golem/database/operation/shots/31055/analysis/Radiation/1212Impurities_TO.ON/data//temperature
plotting time 0.39s
Some mistake during get_data: Missing file: /golem/database/operation/shots/31055/analysis/Radiation/1212Impurities_TO.ON/data//TotalPower
plotting time 0.88s
plotting time 1.08s
===== plotting done ===== 
plotting time 0.56s

real	0m7.059s
user	0m5.912s
sys	0m0.380s
=== postanalysis === Time: 7,061s