#!/bin/bash

source /dev/shm/golem/Commons.sh

diag_id=BasicDiagnostics
setup_id="DetectPlasma"
whoami="Diagnostics/$diag_id/$setup_id"

#whoami="Diagnostics/BasicDiagnostics/Diagnostics"

DAS="Oscilloscopes/TektrMSO64-a/BasicDiagnostics"

Devices="$DAS"


# Scope file set-up: TIME,CH1,CH2,CH3,CH4,,TIME,MATH1,,TIME,MATH2
columns="2 3 4 5 8 11"
diags=('U_Loop' 'U_BtCoil' 'U_RogCoil' 'U_LeybPhot' 'U_IntBtCoil' 'U_IntRogCoil')


function PostDischargeAnalysis()
{
    GeneralDAScommunication $DAS RawDataAcquiring
    ln -s ../../Devices/`dirname $DAS/` DAS_raw_data_dir
    
    n=0;for i in $columns; do tail -q -n +13  DAS_raw_data_dir/TektrMSO56_ALL.csv |awk -F "," '{print $1","'\$$i'}'> ${diags[$n]}.csv;((n+=1)); done;
  
    ln -s ../../Production/Parameters/ Parameters
    mkdir Results
    export SHOT_NO=`cat ../../shot_no` # for linux
    sed -i "s/shot_no\ =\ 0/shot_no\ =\ `cat /dev/shm/golem/shot_no`/g" DetectPlasma.ipynb
    jupyter-nbconvert --execute DetectPlasma.ipynb --to html --output DetectPlasma.html 
    #> >(tee -a jup-nb_stdout.log) 2> >(tee -a jup-nb_stderr.log >&2)

    
}


# Tuning:

#cd "/golem/shm_golem/ActualShot/Diagnostics/BasicDiagnostics/"; cp /golem/svoboda/Dirigent/Diagnostics/BasicDiagnostics/DetectPlasma.* .;source DetectPlasma.sh ;PostDischargeAnalysis