ó
æÔPc           @   s‚  d  d d d d d d d d d	 d
 d g Z  d d d d d d
 d g Z d g d d d g d g d d g d d d g d g d g g Z d d d d g Z d d d g Z d d l Z d d  l Td d  l Td d l Z d d! l	 m
 Z
 d d" l m Z m Z m Z m Z m Z m Z d d# l m Z m Z d d$ l m Z d d% l m Z d d& l m Z d d' l m Z d d( l m Z m Z d) Z d Z d Z  e! d* ƒ Z" e! d+ ƒ Z# e! d, ƒ Z$ e% e# ƒ Z& e" d e e& e e& !Z' e( e# ƒ Z) e( e# ƒ Z* e+ dA ƒ Z, e- d. d- ƒ Z. xÚe/ d. d- ƒ D]ÉZ0 e1 e2 e3 e$ ƒ e0 ƒ d/ k  ƒ d Z4 e5 e4 ƒ Z6 y~y¾ e! d0 e7 e0 ƒ d1 ƒ Z8 e8 d2 e8 d3 Z9 e: e8 d4 e8 d5 e% e9 ƒ ƒ Z; y8 e< d0 e7 e0 ƒ d6 ƒ Z= e< d0 e7 e0 ƒ d7 ƒ Z> Wn3 e? e; e@ e9 ƒ ƒ Z= eA e; e@ e9 ƒ ƒ Z> n XWn¹ e< d0 e7 e0 ƒ d8 ƒ Z9 e9 d d … d f Z; e9 d d … d f Z9 eB d0 e7 e0 ƒ d1 d2 e9 d3 d d4 e; d d5 e; d ƒe< d0 e7 e0 ƒ d6 ƒ Z= e< d0 e7 e0 ƒ d7 ƒ Z> n XWn e0 Gd9 GHqn Xe0 GHe0 d: k re9 d 9Z9 n( e; d; :Z; e= d/ 8Z= e= d; :Z= e> d; :Z> eC e9 e; e= k e; e> k  ƒ e, e0 d. <e: e= e> e6 d ƒ ZD xv e/ e6 ƒ D]h ZE e9 e; eD eE k e; eD eE d k  ZF e eF ƒ e) e4 eE <e e2 eF e eF ƒ ƒ ƒ d< e* e4 eE <qxWqWeG e. e, d= ƒ eH ƒ  e1 e) d k ƒ ZI e# eI Z# e' eI Z' e) eI Z) e* eI Z* e5 eI ƒ Z& e& GHd aJ d> „  ZK d? „  ZL d@ GHeL eK e) e* e# e' ƒ d S(B   t   HIt   OIt   OIIt   OIIIt   HeIt   CIIt   CIIIt   NIt   NIIt   NIIIt   M1t   MIVt   Ht   Ot   Het   Ct   Nt   M2i    i   i   i   i   i   i   i   i   i	   i
   i   iÿÿÿÿN(   t   *(   t   norm(   t   qrt   invt   pinvt   eigt   choleskyt   solve_triangular(   t   pearsonrt   hmean(   t
   block_diag(   t   fmin_powell(   t   repmat(   t   time(   t   nanmeant	   nanmediani   s   err.npys   temperature.npys	   shots.npyiø*  i¼  g      à?s   ./electronTemperatures/s   /electron_temperature.npzt   datat   scalet   t_startt   t_ends   /PlasmaStarts
   /PlasmaEnds$   /ElectronTemperatureMedianFilter.txts	    failurediT$  iè  gffffffö?t   .c         C   s  |  t  } |  d } |  d } |  d } |  d }	 |	 t | | | ƒ | }
 d } t |
 | | | | | f ƒ } t t t | ƒ ƒ ƒ } | | :} | d C} | t | t d | d | ƒ ƒ t | ƒ t | ƒ t |  ƒ } t	 d d k rt	 G| G| GHn  t	 d 7a	 | | S(   Ni    i   i   i   iè  (
   t   nt   arctant   hstackt   doublet   amaxt   abst   sumt   sqrtt   sizet   iter(   t   vart   xt   xerrt   yt   yerrt   T_spitzt   at   bt   ct   dt   T_newt   boundaryt   Residt	   max_Residt   chi2(    (    sP   ../includes/analysis/Radiation/1212Impurities_TO.ON/CompareSpitzerResistivity.pyt   fŠ   s     



"

D
c         C   sÌ  t  | t | ƒ <t d d d d | f ƒ } | } y t d ƒ } WnM t |  | d | | | | f d d d	 d d
 d d d ƒ} t d | ƒ n X| t } | d } | d }	 | d }
 | d } | G|	 G|
 G| GHt | | d | d | d d d d d d d d ƒ| t | | |	 ƒ |
 } t	 | | d ƒ t
 ƒ  t	 | | d d d ƒ| t | | |	 ƒ |
 } t	 | | d ƒ t
 ƒ  t | |
 | t k ƒ } | d t |
 | | <t | |
 | ƒ |	 | } d | | t | |
 | ƒ d | } t | | d | d | d d d d d d d d ƒt
 ƒ  t	 | | d d d ƒt	 d d g d d g d ƒ t d ƒ t d ƒ t d d ƒ t d d ƒ t
 ƒ  t t t ƒ | d | d d d d d d ƒt
 ƒ  d  S(    Ngq=
×£pÍ?g      ÀgÃõ(\Âí¿i   s   var.npyt   argst   xtolgñhãˆµøä>t   ftolt   maxfung    €„.At   maxiterg    ÐcAR1   i    i   i   R5   R3   t   fmtR&   t   capsizet	   linewidthgš™™™™™¹?t
   markersizeg      à?gffffffî?i<   t   -s   T spectrometer [eV]s   T spitzer [eV](   t   inftyt   isfiniteR)   t   loadR   t   saveR'   t   errorbarR(   t   plott   showt   wheret   pit   tant   cost   xlabelt   ylabelt   ylimt   xlimt   arange(   R@   R2   R3   R4   R5   t   x0R1   R6   R7   R8   R9   R:   R;   t   indt   Tt   Terr(    (    sP   ../includes/analysis/Radiation/1212Impurities_TO.ON/CompareSpitzerResistivity.pyt   TotalLqr³   sJ    9



1(1

+s   -------------------i<  (M   t	   ion_namest   element_namest
   ions_indext
   single_iont	   multi_iont
   matplotlibt   numpyt   matplotlib.pyplott   ost   numpy.linalgR   t   scipy.linalgR   R   R   R   R   R   t   scipy.stats.statsR   R   t   scipy.sparseR   t   scipy.optimizeR   t   numpy.matlibR   R   R    R!   t   n_ionst	   n_elemetst   kRM   t   errR]   t   shotst   lenR'   t   errTt
   zeros_liket	   T_spitzert   T_spitzer_errt   zerost   T_allRZ   t	   shots_allt   ranget   shotRR   R,   t   floort
   shot_indexR/   t   n_spect   strR"   t   tempt   linspacet   tvect   loadtxtt   plasma_startt
   plasma_endt   aminRL   R+   t   savezt   mediant	   tvec_spect   it	   shot_tempRP   RQ   R\   R0   R@   R_   (    (    (    sP   ../includes/analysis/Radiation/1212Impurities_TO.ON/CompareSpitzerResistivity.pyt   <module>   sž   *?

.& 8"	



(&0


	)	=