
ÚUc           @   s"  d  d l  Z  d e  j d <d  d l Td  d l Td  d l Z d  d l m Z d  d l m Z d  d l	 m
 Z
 m Z m Z d  d l Z d  d l m Z d  d l j Z d  d l Z d  d	 l m Z d  d
 l m Z d  d l m Z d  d l m Z e a e a e Z i dH d 6dI d 6d 
d 
d  d  d 
d  d 
d  d 
d  d 
d 
d 
d 
d 
d  f d 6Z e  dJ  Z! e  dK  Z" i d d d d d d d d d d d d d d d d  g d 6d d d d d d d d d d d d d d d d  g d 6d d d d d d! d d d d d d" d# d d d  g d 6d$ d% d& d' d( d) d* d+ d, d- d. d/ d0 d1 d2 d3 g d 6Z# d4 d5 d  d6  Z$ d7 e% e& f d8     YZ' d  d9  Z( d:   Z) d;   Z* d<   Z+ d=   Z, d>   Z- e d?  Z. e d@  Z/ e dA  Z0 d dB  Z2 dC   Z3 d dD  Z4 dE   Z5 dF   Z6 e7 dG k re6   n  d S(L   iNt   Aggt   backend(   t   *(   t   signal(   t   fftconvolve(   t   Processt   Poolt	   cpu_count(   t
   mquantiles(   t   cwt(   t   fftshift(   t   soundGenerator(   t   evaluatei   i.  i    iPF  gB!a?gDr?gķq?gEk n?gWHj?gQL]?ge?gн.Gg?gW?gϧD/b?gB`?gg{Q?gsKľA?g(L?I?gJX^?gVҊo(|f?gZd?g?gld?g>"d?gŴ 4Qk?g<Fp$^j?g;Onr?ga#qc?g/}`p?gAQ4rl?g%Qp?g1gsb?gbj?gqX:j?gLq ?g0*n?g_`Q]?g˻Gd\&j?g1I$l?i   t   hanningc         C   s  |  j  d k r t d  n  |  j | | k  r: t d  n  | d k  rJ |  St |   }  t |  d |  }  t |   } t | t  s t |  t	 k r t
 j | |  } ni t j |  } t | j  d k r t d   n  | j d |  j d k rt d	   n  | j d } x t |  j d  D] } t d |  | d f |  | | d d  d  f |  | d  d   f d |  | d f |  | d | d  f f } t | | | j   d
 d | | d !| | d  d   f <q'Wt | d |  } t |  S(   Ni   i   s,   smooth only accepts 1 or 2 dimension arrays.s1   Input vector needs to be bigger than window size.i   is   window must be 1-Di    s   window is longer than x.t   modet   same(   i   i   (   t   ndimt
   ValueErrort   shapet
   atleast_2dt   swapaxest
   empty_liket
   isinstancet   strt   typet   tupleR   t
   get_windowt   npt   asarrayt   lent   ranget   r_R   t   sumt   squeeze(   t   xt
   window_lent   windowt   axist   yt   wt   it   s(    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt   smooth<   s,    !r?t   LogFormatterTeXExponentc           B   s    e  Z d  Z d   Z d   Z RS(   sD   Extends pylab.LogFormatter to use 
    tex notation for tick labels.c         O   s   t  t |   j | |   d  S(   N(   t   superR+   t   __init__(   t   selft   argst   kwargs(    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyR-   b   s    c         O   s   t  t |   j | |   } | j d d  } t |  } t t |   d k r} t j d d t	 |   } d | d } n8 t
 d t t |  d   } d	 t	 |  d
 | } | S(   s?   Wrap call to parent class with 
        change to tex notation.t   -t    i   s   e(\S)0?(\d+)s   \\cdot 10^{\1\2}t   $i    i   s   $%.s   f$(   R,   R+   t   __call__t   replacet   floatt   abst   log10t   ret   subR   t   maxt   int(   R.   R/   R0   t   labelR"   t   n(    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyR4   f   s     (   t   __name__t
   __module__t   __doc__R-   R4   (    (    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyR+   ^   s   	c         C   sQ   t  j |  d | } t  j |  d |  }  t  j t |  |  d d d } | S(   NR%   i    g)Ǻ?(   R   t   medianR   R7   (   R"   R%   t   mR)   (    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt   mady   s    #c         C   sW   t  | d | d  } t d t | |    } t | t t j |    | } | S(   Ni   y              (   t   aranget   expt   outert   dott   conjt   linalgt   pinv(   R"   R&   t   nft   Fthetat   Et   Fx_(    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt   DFT   s    "c          C   s  d d l  m }  d d l m } m } m } m } |    } |    j } d \ } } y% t	 rw | d d t
 \ }	 } n  Wn" t k
 r }
 t
 a	 d G|
 GHn Xy t rt| d d d t \ } } | d d	 d t \ } } | d d
 d t \ } } | d d d t \ } } | | | | | | | g f  } | d  d   d f | d  d   d d   f }	 } | d :} n  Wn t
 a d GHn X| j } | d  k r| d  k rt | | f } n | d  k r| } n | } | d } | d } | d } t |	 | | | |  \ }	 } |	 | f S(   Ni(   t   Shot(   t
   list2arrayt   deconvolveExpt   save_advt	   saveconstt	   NIoctopust   return_channels   No data from ringt   anyt   mirnov_1t   mirnov_5t   mirnov_9t	   mirnov_13i    i   gMb@?s   no data from mirnovt   plasmat   plasma_startt
   plasma_end(   NN(   t   pygolem_liteRQ   t   pygolem_lite.modulesRR   RS   RT   RU   t   get_datat   Nonet   ringt   Falset	   Exceptiont   mirnovt   Truet   shot_numt   c_t   PrepareSignal(   RQ   RR   RS   RT   RU   t   Datat   gdt   Ringt   Mirnovt   tvect   et   dast   m1t   m5t   m9t   m13t   shott   dataR]   t   tstartt   tend(    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt   LoadSignal2   sD    "	
"3			


c         C   s   d GHd d l  m  } | |  d  } | j } | j } | |  d  j } | |  d  j } | |  d  j } t | | f t t d  t d	  d
 f d  d  d   f } t | | | | |   \ } } | | f S(   Nt   loadingi(   t
   golem_datat   niturboR_   R^   t   nistandard6132i   i   gMb@?(   R}   Rx   Rp   Rj   R   t   onesRc   Rk   (   Rw   R}   t   objRx   Rp   Rz   Ry   t   data2(    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt
   LoadSignal   s    		>c      
   C   s  d GH| d k  r d } n | d k  r/ d } n d } | d k r t  r t r t t t |  t f } t t t |  t f } q t  r t } t } q t t |  } t t |  } n  | | | d  d  d   f :} t	 j
 | d d } t | d d d } d } t	 j | d d d d d t }	 | t | d d d |	 d d 8} t t |  |   }
 t t |  |   } | |
 |  d  d   f } t	 j
 | d d } |  |
 | !}  |  | f S(   Nt	   preparingi.  i    iPF  R%   gư>ie   g     @@g      ?g    .AR$   t   hammingt	   pass_zeroR#   g    A(   Rg   Rd   R   t   arrayt   EffectiveAreat   MirnovEffectiveAreat   RingCoilOrientationt   MirnovCoilOrientationRc   R   t   detrendt   cumsumt   firwinRh   R*   t   argminR7   (   Rp   Rx   Ry   t   tfinishRw   t
   calib_shott   AEfft   polarityt   Nt   tapst   nstartt   nend(    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyRk      s6    			""c      	   C   s   t  |   }  d } t j j |  s4 t j |  n  t j   } t t    } | j t	 g  | D]9 \ } } |  d  d   | f d | d t
 |  f ^ q_  } | j   | j   d Gt j   | GHd  S(   Ns   ./mp3/i  t   sounds   generated sound(   t   realt   ost   patht   existst   makedirst   timeR   R   t   mapR   R   t   closet   join(   t   mode_signalt   modesR   t   t2t   poolR(   RC   t   out(    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt   GenerateSound
  s     R

c         C   s  d GHt  d | t |  d  d } t |  } t |  } t d  } | j d d d d g  } | r | j d d	 d
 | j j t	 d d d t
   | j j t	 d d d t
   n  | j t d  d | d d | d d |  d d |  d d g d d d | d | d d }	 t d  }
 | j j |
  | j | d d | d d t |   d t |   d g  | j d  | j d  t j   } xW | D]O \ } } |	 j | d t | d  | d f  | j d t |  d  qWd Gt j   | GH| j   d  S(   Nt   PlotSpecrogramsi   i   t   spectrogramg?g?g333333?t   logt   nonposyt   clipt   basei
   t   labelOnlyBaset   extenti    g     @@it   aspectt   autot   vmint   vmaxt   interpolationt   bicubics	   time [ms]s   Frequency [kHz].s   ./graphs/spectrograms   .pngs   plotted spectograms(   i   i   (   R   t   stdt   amint   amaxt   figuret   add_axest
   set_yscalet   yaxist   set_minor_formatterR+   Re   t   set_major_formattert   imshowt   zerost   MultipleLocatort   xaxist   set_minor_locatorR%   t
   set_xlabelt
   set_ylabelR   t   set_datat   sizet   savefigR   t   clf(   t   freqt   fieldt   tR   t   logscaleR   R   t   figt   axt   imgt   minorLocatorR(   RC   (    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyR     s0    "
_=(c         C   sH  d GH|  j  d } t |  d d } t t j | d"   } | | } t |  d d }	 |	 t |	  :}	 t d d#  }
 t d	 d
 d d  d d d d d g } |
 j	 d  } t
 | d | d t |  d   d } g  | D]0 } | j | |	 d  d   | f d  d ^ q } | j | g  | D] } d | ^ q"d d d t } | j   j d  | j d  | j j t    | j | d d | d d  x! | j   D] } | j d  qW|
 j	 d  } | r'| j d d d | j j t d d d t   | j j t d d d t   n  g  | D]6 } | j | | d  d   | f d d d d ^ q.} | j | g  | D] } d | ^ qzd d d t } | j   j d  x! | j   D] } | j d  qW| j | d d | d d  | j d  | j d   | j | d d | d d  |
 j d!  t    d  S($   Nt   AnalyzeSpectrogramsi   R%   i    i   i   t   figsizei   t   hspaceg?t   wspaceiii   g     @@i
   s   M=%dt   loct   bestt   fancyboxg      ?s   Amplitude [a.u.]i   i   R   R   R   R   R   t	   linewidths   t [ms]s   Frequency [kHz]s   graphs/analyze.png(   i   i   (   i   i   (!   R   t   argmaxt   int_R   t   medfiltR   t   meanR   t   subplots_adjustt   add_subplott   linspaceR   t   plott   legendRh   t	   get_framet	   set_alphaR   R   R   t   NullFormattert   set_xlimt	   get_linest   set_linewidthR   R   R   R+   Re   t   set_ylimR   R   R   (   R   Rp   t   fvect   fmint   fmaxt	   log_scalet   n_modest   ind_freqt   max_freqt   max_amplitudeR   R   R   t	   tvec_specR(   t   plotst   legR=   (    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyR   D  sL    
'=5 
C5  c
            s  t  s
 d  St |  d  }
 t d d@  } | j d  } | j d  } | j t | | d d f  d	 | d d
 | d d
 | d d | d d g d d d t d d } | j d  | j g  g  d d d t	 \   | j
 d d t d  | j d  | j d d  | | | d } | j | d d | d d  | j d  | j d  | j d d d d | j d t	 } | j j t d   | j j d  d! d" d# d d$  | j d%  |	 r| j d& d' d( t d) d d* t	  } | j j |  | j j |  n    f d+   } d } t j d, } t d- d. d/ d0 d1 d2  } | d3 d d4 | d5 d6 d7 d8  } | j | d9 d:  xt d t |  d  | |  D]} | | d t | d  |
 } | j  d; | | d d
 | | | d f  t! |  | | |  d  d   f  } | t" | d< d d  d  d   f :} | d  d   | d  d   f j$ } t% | t& |  d  } | j' |  | j( d t) | | d d d   d  d   f   t* | |  | |  j+   d | f  j$ } t, | d  d  |  <  j' | d | d= | d  d  d   f j$ j-    d t. j.   | } t. j.   } t/ j0 j1 d> | d? |
 | f  t/ j0 j2   | j3   qWWd  QXd  S(A   Ni    R   i
   i   iy   iz   i   i   R   g     @@ig      ?R   R   t   animatedR   t   nearestt   YlOrBrR   g333333?g333333ӿg?s   poloidal angle [rad]R"   g    .As   $\Delta$t [$\mu$s]s   f [kHz]g?g?R2   t	   transformt   colort   rt	   linestyleR1   g?s   Poloidal mode number MR   R   R   R   R   c              s     j  g  g     f S(   N(   R   (    (   t   plot2(    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt   init  s    t   mencodert   titlet   NTMt   artistt
   Matplotlibt   comments   Animated CWT spectrogramt   fpst   metadatat   codect   mpeg4t   bitratei  s   graphs/AnimCWT.mp4id   s   i=%d t=%.2fmsR%   i   s     plotting %2.1f%%  fps:%2.1fg      Y@(   i
   i   (4   t	   animationR   R   R   R   R   Rh   t   set_cmapR   Re   R   t   piR   t   axvlineR   R   t   textt	   transAxesR   t   set_major_locatorR   R   t   gridt
   set_xscaleR+   R   R   t
   manimationt   writerst   dictt   savingt   xranget   set_textt   copyRD   Rc   t   Tt   hypotR   R   t   set_climR   t   tileR   t   nant   ravelR   t   syst   stdoutt   writet   flusht
   grab_frame(   R"   R   R   Rp   t   thetat   nmodst   ncht	   framesampt   hopsampR   t   ntR   t   ax1t   ax2t   mag_imgt   Dtt	   time_textt	   ax_formatR   R   t   FFMpegWriterR  t   writert   jt   i_specR&   t   imageR  R  (    (   R   sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt   AnimateSpectrogram  sd     9!!$!&/&&"4*5"c         C   s!  t  | |  } t  | |  } | d  k rH t t |  d   | } n  t |   \ } } t d |  }	 d }
 d } d } d } t t t |  d d d	 d
 d d d   } |  | t	 | d d d  d   d  f :}  t
 r6t r6t d  } t | d d } | d t t t d  d t d  d f 7} nB t rWd t t d  d } n! t
 rxd t t d  d } n  t | |  |	  } d GHt t    } | j t g  t |	  D]9 } | d  d   | f d | | | | | | |
 f ^ q } | j   | j   | d d d  d  d  } g  t |	  D] } t | j   d  ^ q2} t |  } t t |	  t |	 d |	 d   } t | |  t | d  d  d  d f | | | |
  | d  d  d  d  d   d  d  d  f } t | | | |  t |  | | | | |	 | | | 	 d  S(   Ni    i   g     @g     p@g?i
   i   R#   g     @@R$   R   R%   i   s   phi.npyg      0@i   g      @s   calc spectrogramsi.(   R<   Rc   RE   R   R   t   mint   sqrtR7   R*   R   Rd   Rg   t   loadRB   R  R   RP   R   R   R   R	   R   R   R   t   popt   dstackt   zipR   R   R   R5  (   R"   t   fst   frameszt   hopRp   R'  R(  R)  R&  R%  R   R   t   djt   pt   filtered_stdR$  t   fxR   R(   R   R   R   R   (    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt	   multi_cwt  sF    .*3X

/')+c         C   s   |  \ } } } } | t  | d d d  d  d   f } t | | d  } t j | | d  d   d  f d d } | d  |  d  d   f S(   NR%   i    i   (   RD   Rc   RP   t   fft(   t   .0R&   R'   t   nfmaxR$  t   fyt   f(    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt	   calc_stft  s
    &)c         C   s\  d GHd } d } |  j  \ } } t d t j t j | |    }	 t | |  }
 t |	  } | d  k r t t |  d   | } n  t | | |	  } t	 d  } t
 | d d } | d t t t d  d t d	  d
 f 7} t t    } t d t |  d  |	 |
  } | j t g  | D]2 } |  | | |	  d  d   f | | | f ^ q* } | j   | j   g  | D] } t | j    ^ q} t |  } t t |  d d  } t |	  | d |	 } t t |  t | d | d   } t | | | d |  t d | g | d  d   d  d  d  d  d   f | | d t d  S(   Nt   stfti   g     @i   i    s   phi.npyR%   g      0@i   g      @g       @iR   (   R   R<   R   t   ceilt   log2R   Rc   RE   R   R8  RB   R  R   R   R   R  R   RI  R   R   R7   R9  R:  R   R;  R   R   Re   (   R"   R<  R=  R>  Rp   R%  R   R)  R&  R'  R(  R'   RF  R$  R   t   indR(   R   R   R   R   (    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyRJ  ,  s2    &0K

%'c            s  t  j   d d     t   d d :  t   d   d t t t d  d t d  d f  t     f d	  } t d d
 d t   d  d d  } t	 t
 t j   t t   d   d  d   d  f d d  d d } t |  } t | | | d | d ! t | | d | d ! } t d |  } t t d  d d } t t d  d d } t | t d d |   f }	 t | |	 d |  f d d d d
 d d d d d t \ }
 } } } } } t   } t |  | |
 |  d t | j   t d  } t  d  |
 d d !t |
 d d !  t  d  | d  d  t  d  | d  d   d k rt  d | d d  t  d d !|
 d d !d  n  t d d t  | j   t d  |
 d S(    NR%   i    i   i   i   g      0@i   g      @c   
         s  |  d } |  d } |  d } t  |  d  } | d k r |  d |  d t d k  c t d 7<|  d |  d t d k c t d 8<n  |  d } | t |  8}    | } t d t | | | d  d   d  f | |  | }	 | rYt |	 j d  d  d    f d t d d d t   d  d  d    f d t d d n  t j |	   j t	   d	 d d  d   d  f  t j t
 |   S(
   Ni   i    i   i   i   s   --R   g333333?R%   (   R<   R  RB   t   sinRc   R   R  RJ   t   normR   t   diff(
   t   parRp   t   show_pltt   ARH  t   phit   Mt   DthetaR$  t   model(   Rx   R&  t   theta0(    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt   Model[  s    


')
863g    .AiHq  s   phi2.npys   phi.npyig?R/   t   maxiterg     j@t   maxfunt   xtolgư>t   ftolt   full_outputRR  t   phasei   t   :s   -.i   s   --g?(   R   R   R   R   R  R   RE   Re   R   R   R7   RD  t   rfftR   Rc   R   R    R;   RB   R8  t   fmin_powellRh   R   R   t   showR   t   xlimt   pause(   Rp   Rx   RY  RH  t   FR(   t   f_maxt   theta_t   theta__t   x0t   Pt   foptt   direct   _t   warnflagR   (    (   Rx   R&  RX  sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt   LSQfitR  s:    ,'J8H	
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)!

c          C   s   x6 d d g D]( }  t  j j |   s t  j |   q q Wt t j  d k sa t j d d k r t   \ } } t | d | d d d  } t	 | d	 d
 | d | d d l
 m } t  j d  | d d  n  d  S(   Nt   graphst   mp3i   R   ii    i   gh㈵>g    .AgMb@?Rp   (   RU   s:   convert -resize 150x120\! graphs/spectrogram0.png icon.pngt   status(   R   R   R   t   mkdirR   R  t   argvR{   R;   RC  Ra   RU   t   system(   R   Rp   t   sigR>  RU   (    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt   main  s    (t   __main__(   ii   i   i   ii   iiii   ii   iiii(   iii   i   ii   ii   ii   iiiiii(   iii   i   (   i   i   i   i   (8   t
   matplotlibt   rcParamst   matplotlib.pyplott   numpyR   t   scipyR   t   scipy.signalR   t   multiprocessingR   R   R   R   t   scipy.stats.mstatsR   t   matplotlib.animationR	  R  R9   t   CWTR	   R
   t   SoundGeneratorR   t   numexprR   Re   Rg   Rh   Rd   R   R   R   R   R   R*   t   LogFormattert   objectR+   RD   RP   R{   R   Rk   R   R   R   R5  Rc   RC  RI  RJ  Rp  Rx  R?   (    (    (    sM   /golem/database/velin//includes/analysis/Magnetics/0712MultiCWT_TO.ON/main.pyt   <module>   sl   
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
D"		A		*	%?YC	&	I	